Why not use a crocodile clip onto the tool when you want to use the tool offset / probe function
I am using a crocodile clip on the tool or when the tool is to big for the clip I clip it to a bolt head on the spindle mount, but for the testing I have been clipping to the tool. To add a little more to my grounding theory if I touch the ground to the tool in the middle of the zeroing macro I can feel the machine react to the contact, not much, but there is something happening and this is long before the tool reaches the touch plate.
Then put the 5v (pin 13 or 15 input..forget which one you are using) to your insulated calibrated height block.... (You could use a piece of blank PCB (printed circuit board)....
you just described my setup as it stands now, although my circuit board is loose so I can move it around to the work piece.
I still think you have a grounding issue with a ground loop somewhere as there should be no reaction if you touch the tool to the ground at any point ^^^^^ (read the quote / statement above from an earlier post).
Yup I've been having a look at the manual...thanks
And I've put a post on the Warp9 website (suggest you register and have a look for yourself).
http://www.warp9td.com/(Andy should be working for a little while longer yet US time)
Rob