On the Y axis I have a limit switch (Home) at the plus side of the table on pin 13 and another switch on the minus side of the table (Limit) on pin 15. Also on the A axis I only have one switch (Home) at the plus side of the table on pin 12.

In the Ports and Pins, Input Signals tab, do I enable both the Y++ and the Y Home. or just the Home?
Same on the A axis, do I enable both the A++ and Home?

Assuming A is slaved to Y.

Y++ and Y Home on Pin 13
Y-- on Pin 15
A Home on Pin 12

Thank you Gerry, yes they are slaved and I will use your settings