I skimmed the instructions and they look fairly complete.
Note that the kernel speed should not arbitrarily be set to the max, 100kHz. It should be the lowest possible setting and varies with your max motor speeds. Actually, to be technical, the kernel speed required is determined by the actual number of pulses per second required to drive your motors at the selected maximum velocities. It is also affected by the resolution set on the motor driver.
Basically, you could work through the calculations, or just set it to 25kHz and bump it up one level at a time if it says the kernel speed is too low. I run my table at a high resolution (can't remember off hand what it was, but max on the controller) and have max velocity of 130 inches per minute, and a kernel speed of only 35khz. I can't see your machine requiring more, but rather 25kHz will likely work just fine.
There's no point in setting it higher than required. Higher kernel speeds have the potential for reduced reliability.
Also they recommend a laptop, and as Tweakie already mentioned it's not a good idea.
There may be more that's a little bit off, or maybe not quite the best way, but it should give you a pretty good start and you can learn from there. Hopefully there's enough in there to get you up and running!
Enjoy!
Chris