Ok, I know this is an old topic but the issue hasn't been resolved for me, at least not all of it.
Thank you for the suggestions that have been made.
I ended up buying a new dedicated computer for this machine and that fixed all the weird glitches the mill would have from time to time and the Single surface, 2 surface centering (inside), Corners (inside) and Bore/Boss (bore) probe routines work flawlessly. All the others... not so much.
The problem seems to lie in the routines that require more than 1 axis movement to get into position for probing ie; X, -Z, -X to first probe then X, Z, -X, -Z, X to second probe.
I tried the uncheck box and that did at least get me through half the 2 Surface Centering (outside) probe routine but with velocity FIFO buffer errors as the axis movement direction changes. Clearing these FIFO errors would allow the routine to continue to probe the first surface (so from center to first probe and back to center would give me a total of 8 velocity FIFO errors to clear). It would then pause at the center (very briefly) on the way to the next probe position but fall short of the intended destination, moves -Z expecting to move down then back in to probe but obviously gets a false probe hit as the probe touches the top of the thing it's meant to be going down beside.
Wow, try and piece that together in your head. A video would be easier to see but I'm to lazy for that.
And before anyone asks, The width and Approach and starting position are correct.
I tried changing the buffer size and plugin frequency to alleviate the FIFO errors but this didn't help.