M3 or M03 is the same as turning your spindle on a standard system.
The same is done for Plasma, M3 or M03 should make the attempt to turn your Torch on.
Once your Torch is on and you have an ARC OKAY signal, your THC should work its magic.
In the configuration side have Motor2 set up as your Z Axis and have Motor5 enabled and setup as your OB1 Axis. Steps per unit, Acceleration, Max Velocity and direction should all be the same between the two motors.
From your TCH, you should have 3 wires coming to your Motion Controller (Sometimes this is a cable.) These three wires should be ARC OKAY, UP, DOWN.
Inside of your Mach Inputs Config, you will have 3 inputs available for THC. THC ON, THC UP, THC DOWN. ARC OKAY is your THC ON, UP is your THC UP, and DOWN is your THC DOWN.
These three signals control your Torch Height after the probing and Torch ON Sequence.
If this is set up correctly and you have the proper target voltage in your THC, you should have no issues with Torch Height.
By default on the plasma profile, you should not have to modify your M3 macro.