Homing is taken care of by the motion controller, so this will be motion controller dependent, further more, the ability to use the Limit switches as home switches is motion controller dependent. I use the HiCON from vital systems for everything and it has the ability to use limit switches as home switches; I have this set up on 1 machine and it works fine.
I have never used the Pokey57 controller so I don't know if they have this functionality or not. A quick search on their website showed many features about the board, but nothing about using the limit switches as home switches.
I know on the Vital System's webpage on the HiCON, it specifically says "Use Limit switches as homing sensors."