This is a Parameter that was in mill that we moved to lathe that didn't effect you before . You need to open the parameter.ini file in the profile. change the following to look like this with Mach4 OFF:
[1801]
Desc=OEM parameter 1801
Type=2
Value=NULL
The value is zero now... This is a place where you can change how Gcode is ran. Sort of cool you can limit the stroke of the Zaxis

. Please adjust that and tell me if your set.
Thanks and sorry for the troubles!
Brian