Hi Craig,
Very grateful for your comments, I will certainly look at doing that, I have limit switches on all axis at moment using pins P12 P13 and P15 for X Y Z, P11 for Tool setting and P10 for E-Stop, they go via high when active which I know is wrong so will modify that so if wire breaks no damage is done.
I have another PCI Parallel card which I will use as you suggested, and I am looking at making another Breakout board from the schematic I put up on this thread, I am an electronics/Computer engineer so that makes things easy.
I was also looking at some YouTube videos on all these procedures and found that Roger Webb gave me an idea to try the Soft Limits similar to the milling table that he did.
I also think the "A" drive that was singing a bit once I homed my system, it only stopped when I hit Reset or a limit switch again, may stop with proper Homing.
Also got to set the table Soft Max and Soft Min, I presume as I have "A" slaved to "X" I set "X" axis settings in "A" settings the same.
Regards John