I will answer the best that I can, I may be wrong so hopefully brian or someone with more know how can correct me, but basically to control the outputs for anything other than the built in Mach functions (Like the spindle and Coolant relays) you will need to create some vbasic code in either a macro or a screen button using a command like ActivateSignal(Output1) or DeActivateSignal(Output1) So You can create your own Mcodes or alter the standard Mcodes by editing the associated Macro files or creating an on-screen control to control you outputs or do both. Hope that Helped...
Mike