I too would like to know this, but here is what I did to get around it.
When you assign a particular pin to an output or input in Ports and Pins, you can use the macropump to evaluate the IsOutputActive() or IsActive() and then SetUserLED() accordingly.
Here is a sample from my macropump...
'Spare output 7
If IsOutputActive(Output7) Then
SetUserLED(1000,1)
Else
SetUserLED(1000,0)
End If