"Now there is no reason that your motor and drive will not work and I suspect it may be due to you using the standard outputs on the G540 as I suspect they will be relatively low frequency outputs. I have not looked to see if there is any info on Geckos site about their max frequency though, so its just a guess.
Hood"
You were right! I pulled the step and direction signals out of the G540 and ran them through the Port 2 on the SS using the 5V pin they provide...works as expected in both linear axis mode and Spindle Mode. Thanks man,
Thanks to everyone for their input...I've been pulling my hair out for weeks and you guys helped me get this going. I appreciate it.
-Kyle-