I'm not sure about how this is set up or so not sure about steps per unit or any of that for what I've been reading this is kinda crucial to know and I will do my best to figure this things out
See if basic jogging and axis moves via commands and jogging work for a basic mill.
Set the drives up amps etc and then tune the steppers accordingly for a simple mill
including steps per , velocity, accel and use the axis calibration if you want.
You will gain valuable experience that will be appplied to understanding of the plasma!
Plasma is somewhat more involved since there is piercing, and other settings that come
into play for the cnc plasma to function correctly. Just another learning curve
you need to understand.
If all works well as a simple milling machine then your problem is the plasma setup.
All that arcing etc can cause RF which can do a number on electronics, but, leave
that as a comment for awareness for now.
RICH