Eradicatore,
OK, I re-read your post and it sounds to be exactly the same problem I had.
Here is some background info.
1) I purchased my units (8621 package) through
http://www.discountcampus.com/cgi-bin/webc.exe/store/cncSystemsWin.htm and I can highly recommend them. The system came (June 2012) complete with a Dell Optiplex 380 and PCI parallel card. I opted for Windows OS and March 3. Windows is version 7
2) starting Mach3, the very first moves in any direction were mostly correct. Subsequent moves were incorrect. When the controller was warmed-up, the errors were immediate...always Z- and X+ as Y+ I thought it was me because my lack of knowledge of Mach3. (My other machine has a Syntec controller)
3) Between David (of dPP engineering/discount campus) we spent easily 12 (maybe more) hours over several days on the phone. I have a VOM and we went over all the connections on the board. No problem there. We also checked and tried all possible configurations settings but the problem persisted.
4) I contacted Luiz Ally (TechAlly on youtube) and he graciously send me his XML file. Still, the same problem.
5) David then got a RMA and I send the controller back to Sherline for exchange. Replacement arrived and.....same problem.
6) David got a new RMA for the second unit and I got a new board again. Still the same story.
7) Having never heard of a problem like mine, David suspected too weak a parallel signal and suggested the parallel buffer since nothing else seems to work. Obviously Sherline hasn't heard of it either as they didn't suggest trying a buffer before sending a replacement.
The buffer corrected the problem immediately. In retrospect I wish I had ordered his (dPP) "CNC Extended Box" (without probe) as that has a built-in buffer but at the time I didn't see the need for the other extras and the switches.
As to the white dots on the IC, well, current unit and previous have them.
I had an old PC (7-8 years??) in junk pile storage and the THAT one works without the buffer.
I am neither a technician nor an expert in the CNC field but it looks to me like you have no other option than to get the buffer or see if a friend has an old PC laying around.
Cheers