What you need to think about is the cutter in relation to the workpiece, so for a positive X move the cutter will move left to right so the table moves right to left. For a positive move in the Y the cutter will move away from you so table will move towards.
If you have it wrong then change the reverse option on the Homing and limits page (from Config menu).
For the homing you have the table fully positive in X and Y ao you will need to enter a Home off value equal to the distance of axis travel, again on Homing and limits page. One last thing is you will likely need to change the Homing direction, again on the Homing and Limits page.
Hood