Ok just as I thought, you have outputs 2, 3, 4, 5, 6, 7, 8 and 9 all with Port 1 and pin numbers that you are already using for your motor outputs, you cant have that. Do you actually use the outputs?
As for the backups, yes you can clear them if you wish but make sure you have a real backup saved somewhere, preferably on another drive or even another computer.
Hood