Your machine is not capabale of doing what you want it to do. So quit pushing it, modify the way you work, or
upgrade it or even get something different. If you have backlash but want more accuracy or assurance of position
when machining then get rid of the backlash. You don't need encoders to find the backlash. If the backlash varies
then you have additional problems which only axis component replacement can cure. You have what you have and
if dosen't work for you encoders will not be of any help.
I am not against encoders. I have a digital display unit on the mill for each axis, so similar to having encoder readout, but, provides
nothing of real value other than confirmation that i am at some point / home or whatever, BUT, the Mach DRO is more accurate
than the digital readout and just as reliable becuase i have confidence in my machine and the way it is run.
Do as you wish, I don't think you'll learn any faster.
I don't have big steppers on any of my machines. I replaced the old 34's with 23's. I do have the axis adjusted such that I get
max torque out of them while still minimizing backlash and having reliablility. Bearing adjustment gave me almost 70 oz-in
improvement.
For any given stepper what you are after is max power which is torque times speed and that occurs in rather narrow range.
Go over that max which is required for some machining task and you have an unreliable situation.
Just some opinions,

RICH