Before I decided I was going to disconnect the BOB, and try your idea, I hooked everything up on port3, and sure enough everything works flawlessly. I really think it's the BOB causing the issue. Everything that I need is working now, SO if the time comes where I need more inputs I will bite the bullet and try again.
I'm having some issues with noise on my MPG and switches causing false triggers, axis selecting/deselecting etc. The noise filter under the SS plugin has boxes to fill in values. I'm assuming this will solve my problem but I'm unsure what to put in the box as a value.
Can you dawn some light on this? The Smooth Stepper manual needs some serious revisions and more information.
~Scott